DisGeNET - a database of gene-disease associations

List of shared variants

Coronary Artery Disease, C1956346

Disease: Metabolic Syndrome X

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1007888	MIF-AS1	0.882	0.120	22	23898914	non coding transcript exon variant	C/T	snv		0.46	4
rs1232898090	PPARA	0.637	0.600	22	46198429	missense variant	G/C;T	snv	4.0E-06; 4.0E-06		40
rs116843064	ANGPTL4	0.776	0.160	19	8364439	missense variant	G/A	snv	1.3E-02	1.5E-02	16
rs2108622	CYP4F2	0.742	0.280	19	15879621	missense variant	C/T	snv	0.27	0.22	20
rs429358	APOE	0.590	0.600	19	44908684	missense variant	T/C	snv	0.14	0.16	66
rs7412	APOE	0.641	0.640	19	44908822	missense variant	C/T	snv	6.2E-02	7.9E-02	47
rs2000813	LIPG	0.763	0.200	18	49567494	missense variant	C/A;T	snv	4.0E-06; 0.27; 4.0E-06	0.23	9
rs6507931	LIPG	0.882	0.080	18	49586638	intron variant	C/T	snv		0.52	3
rs1267969615	ACE	0.532	0.760	17	63490960	missense variant	T/C	snv	4.0E-06		100
rs2291725	GIP	0.882	0.120	17	48961770	missense variant	T/C	snv	0.50	0.40	4
rs12149545		0.851	0.080	16	56959249	upstream gene variant	G/A	snv		0.23	7
rs173539		0.882	0.080	16	56954132	intergenic variant	C/T	snv		0.33	11
rs1800775	CETP	0.790	0.240	16	56961324	upstream gene variant	C/A;G	snv	0.51; 5.7E-06		18
rs5882	CETP	0.649	0.400	16	56982180	missense variant	G/A;C	snv	0.62		35
rs708272	CETP	0.708	0.440	16	56962376	intron variant	G/A	snv	0.42	0.38	24
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	98
rs1320702652	MFAP1	0.752	0.160	15	43824536	missense variant	G/A	snv	4.0E-06		11
rs2236242	SERPINA12	0.776	0.280	14	94493715	intron variant	T/A	snv		0.31	9
rs4986938	ESR2	0.641	0.600	14	64233098	3 prime UTR variant	C/T	snv	0.31	0.33	35
rs11066001	BRAP	0.763	0.360	12	111681367	intron variant	T/C	snv		5.8E-03	15
rs1544410	VDR	0.542	0.760	12	47846052	intron variant	C/A;G;T	snv			78
rs2430561	IFNG ; IFNG-AS1	0.590	0.760	12	68158742	intron variant	T/A	snv		0.36	50
rs5443	CDCA3 ; GNB3	0.532	0.760	12	6845711	synonymous variant	C/T	snv	0.36	0.44	106
rs671	ALDH2	0.529	0.840	12	111803962	missense variant	G/A	snv	1.9E-02	5.8E-03	116
rs174546	FADS1 ; FADS2	0.807	0.200	11	61802358	3 prime UTR variant	C/T	snv		0.28	17